Category Archives: publications

CAT goes ICSB

We’ll be joining the COMBINE team at ICSB 2015 as tutors this year. During the COMBINE tutorial on modeling and simulation tools and standards, we’ll be giving a talk about the COMBINE Archive and the COMBINE Archive Web Tools. The talk will be followed by a hands-on session in the afternoon. Date: 25th November, 2015. […]

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Bachelor Thesis completed: Classifying reactions of computational models

Fabienne Lambush just defended her Bachelors thesis Classification of Reactions of Computational Models, which she wrote within the SEMS group. She applied graph algorithms to study the reactions of computational models stored in Masymos. As a result, Fabienne was able to identify patterns in reaction networks which will help us to develop a measure for […]

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Off to DILS 2014

The SEMS team is about to leave for DILS 2014 in Lisbon. It is the third time we will present our work on model management at this conference (after joining in 2009, Manchester, and 2013, Montreal). This year, Rebekka Alm will present the results of her Master’s Thesis on feature extraction from arbitrary sets of […]

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Annotation-based feature extraction from SBML models

Our paper evaluating different methods for annotation-based feature extraction from arbitrary sets of SBML models has been accepted for publication in the Proceedings of the 2014 DILS Conference. The paper summarises the results of Rebekka Alm‘s Masters Thesis. The results will be presented by Dagmar Waltemath at the 2014 DILS  conference in Lisbon in July.

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