BiVeS – Code

Figure 1: BiVeS' modules

Figure 1: BiVeS’ modules and their dependencies


Since version 1.2 BiVeS consists of several submodules. The submodules are described in the following.
Have a look at the announcement to learn how to add the SEMS Maven repository. Binaries of our tools can be obtained from our binaries repository and you can find some documentation at the JavaDoc websites.

xmlutils

xmlutils is a toolkit useful when working with XML documents. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/xmlutils

Add the following to your pom.xml to include xmlutils in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>xmlutils</artifactId>
  <version>[0.3,)</version>
</dependency>

See also our Trac-Project: XML-Utils.

BiVeS Core Library

BiVeS-Core provides core functionality to compare computational models. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/bives-core

Add the following to your pom.xml to include BiVeS-Core in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>BiVeS-Core</artifactId>
  <version>[1.2,)</version>
</dependency>

See also our Trac-Project: BiVeS-Core.

BiVeS SBML Utils

BiVeS-SBML provides SBML integration for BiVeS. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/bives-sbml

Add the following to your pom.xml to include BiVeS-SBML in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>BiVeS-SBML</artifactId>
  <version>[1.2,)</version>
</dependency>

See also our Trac-Project: BiVeS-SBML.

BiVeS CellML Utils

BiVeS-CellML provides CellML integration for BiVeS. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/bives-cellml

Add the following to your pom.xml to include BiVeS-CellML in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>BiVeS-CellML</artifactId>
  <version>[1.2,)</version>
</dependency>

See also our Trac-Project: BiVeS-CellML.

BiVeS Framework

BiVeS provides access to the BiVeS framework. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/bives

Add the following to your pom.xml to include BiVeS in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>BiVeS</artifactId>
  <version>[1.2,)</version>
</dependency>

See also our Trac-Project: BiVeS.

BiVeS WebService

BiVeS-WebService provides the BiVeS WebService. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/bivesws

See also our Trac-Project: BiVeS-WebService.

BiVeS WebService Client

BiVeS-WS-Client provides access to the BiVeS-WebService. You can grab a copy of its source code using:

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git clone git://sems.uni-rostock.de/biveswc-client

Add the following to your pom.xml to include BiVeS in your Maven project:

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<dependency>
  <groupId>de.unirostock.sems</groupId>
  <artifactId>BiVeS-WS-Client</artifactId>
  <version>[1.0,)</version>
</dependency>

See also our Trac-Project: BiVeS-WS-Client.