Management System for Models and Simulations
MaSyMoS is a Neo4J instance containing SBML and CellML Models as well as simulation descriptions in SED-ML format. In addition, MaSyMoS contains bio-ontologies that are most frequently used for the annotation of models, i.e., GO, ChEBI, SBO, KiSAO.
All data is represented as a Graph and can be queried using Cypher. A description of the underlying database is available from our latest publication in Oxford DATABASE.
To try the queries described in the paper we provide access to the Neo4J Cypher endpoint:
Every day at 2am (UTC+01:00) the database will be replaced by a backup, all changes are lost.
Find more Examples and implementation details.
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