Opened 2 years ago

Closed 2 years ago

Last modified 20 months ago

#20 closed task (fixed)

annotate differences

Reported by: martin Owned by: martin
Priority: major Milestone:
Component: code Version:
Keywords: Cc: martin

Description

as soon as bives-core:#44 is done we should annotate our patches with terms from comodi (​http://purl.org/net/comodi)

Change History (15)

comment:1 Changed 2 years ago by anonymous

implement and test change of:

  • variable definition
  • component definition
  • reaction change in component
  • math change in component
  • cellml model name/id
  • annotations
  • hierachry
  • variable connection

comment:2 Changed 2 years ago by Martin Scharm <martin@…>

In a8963f662db78643256386b1721a7571ece1e2a0:

first version of cellml patches with annotations [see #20]

ready to implement special cellml procedures

comment:3 Changed 2 years ago by Martin Scharm <martin@…>

In 6cf55eb4bb9e1e6015eeba5af8034dbf2b83029b:

first version really supporting patch annotations [see #20]

comment:4 Changed 2 years ago by Martin Scharm <martin@…>

In 8106f99a6aa4eae97c5aef1e2aed331b7639c398:

implement first cellml specific annotations [see #20]

now we have the infrastructure to go big :)

comment:5 Changed 2 years ago by Martin Scharm <martin@…>

In 6b1314386f1a6fe4ad949484d880ab6e77b2c391:

change math to be valid in annotation test doc [see #20]

comment:6 Changed 2 years ago by Martin Scharm <martin@…>

In 6ebf40e6ef711d2ae5482426e735c71dd7d9bdd2:

added first essential cellml annotations [see #20]

so far, the following stuff gets annotated:

  • spec change
  • model rename
  • variable def/name change
  • variable del/ins/move
  • component rename
  • component del/mov/ins
  • math change or ins/del/mov

comment:7 Changed 2 years ago by Martin Scharm <martin@…>

In 4327b3093527f57f272f735394fd5791f29beff1:

add tests for cellml annotations [see #20]

currently tests for:

comment:8 Changed 2 years ago by Martin Scharm <martin@…>

In c0236aec60a26fccb9482681d3ee4dfde6291f04:

check for insert math [see #20]

comment:9 Changed 2 years ago by Martin Scharm <martin@…>

In 68b2a3a65c9e25543d50ca4063375c30aab1788b:

add detection+annotation of reaction changes [see #20]

  • reaction change
  • reaction del/ins
  • reaction reversibility change

also added corresponding tests

comment:10 Changed 2 years ago by Martin Scharm <martin@…>

In bedab557c7b6226194e16245f2271a3fc2effe07:

implement annotation for unit changes [see #20]

  • del/ins of units
  • rename
  • change of units

respecting global units as well as units defined locally in components

comment:11 Changed 2 years ago by Martin Scharm <martin@…>

In 26fd8cc0a5d9b1d5e3d7691f2dbb885077a025c1:

add support for variable connection annotations [see #20]

now also recognising changes in variable connections...

comment:12 Changed 2 years ago by Martin Scharm <martin@…>

In e3b94b060061e877256a257764752caf5130b784:

add support for annotation of hierarchy changes [see #20]

comment:13 Changed 2 years ago by Martin Scharm <martin@…>

In cdc3f405946d213d50b213b1d512bbc91cfec4c1:

implement support for annotating changes in textual annotations [see #20]

comment:14 Changed 2 years ago by Martin Scharm <martin@…>

  • Resolution set to fixed
  • Status changed from new to closed

In 670201a090d8b35e1866695aa6e638761abee967:

releasing first official version supporting annotations [fixes #20]

comment:15 Changed 20 months ago by Martin Scharm <martin@…>

In a86ae847289d1c018df88bd7f1af833401c46068:

update to latest bives version

this does not include annotations by default [see #20]

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