Graphs encoded in DOT

  • e.g. to convert them to static images using GraphViz?
  • see also DOT
  • TODO: detailed description of the graph
  • TODO: how to run graphviz (neato, dot etc.. differences? different examples)
  • TODO: demo
  • example Graph:
digraph BiVeSexport {
	graph [overlap=false];
	edge [len=1.3];
	node [fontsize=11];
	subgraph clusterc1 {
		label = "compartment";
		color=lightgrey;
		s2[label="sigb",shape=circle];
		s1[label="lacz",shape=circle];
		s4[label="x",shape=circle];
		s3[label="IPTG",shape=circle];
		r3[label="sigb degr",color=yellow,shape=diamond];
		r2[label="lacz degr",shape=diamond];
		r1[label="sigb syn",color=yellow,shape=diamond];
		r4[label="x syn",color=yellow,shape=diamond];
		r5[label="lacz syn",color=yellow,shape=diamond];
	}
	s2->r3;
	s4->r3[color=red,style=dashed,arrowType=normal];
	s4->r3[color=blue,style=dashed,arrowType=odot];
	s1->r2;
	r1->s2;
	s3->r1[color=red,style=dashed,arrowType=normal];
	s3->r1[color=blue,style=dashed,arrowType=odot];
	r4->s4;
	s2->r4[color=red,style=dashed,arrowType=normal];
	s2->r4[color=blue,style=dashed,arrowType=odot];
	r5->s1;
	s2->r5[color=red,style=dashed,arrowType=normal];
	s2->r5[color=blue,style=dashed,arrowType=odot];
	label="Diff Graph created by BiVeS";
}
Last modified 3 years ago Last modified on Feb 7, 2014, 2:54:21 PM
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