Opened 18 months ago

Closed 17 months ago

Last modified 13 months ago

#18 closed task (fixed)

annotate differences

Reported by: martin Owned by: martin
Priority: major Milestone:
Component: code Version:
Keywords: Cc: martin

Description

as soon as bives-core:#44 is done we should annotate our patches with terms from comodi (​http://purl.org/net/comodi)

Change History (17)

comment:1 Changed 17 months ago by Martin Scharm <martin@…>

In 71194f840fea315a737fc486aff04310235beceb:

start implementating annotations of changes using COMODI [see #18]

comment:2 Changed 17 months ago by Martin Scharm <martin@…>

In f84dea233169ce2ee6fa6acfbbfafb4a5130b7ed:

create test infrastructure for annotation tests [see #18]

infrastructure taken from bives-cellml:source:src/test/java/de/unirostock/sems/TestAnnotations.java

implemented first test for renaming variables

comment:3 Changed 17 months ago by Martin Scharm <martin@…>

In ba4518f223bdb04780fb3ef81020f5b0ddf86a70:

created anotation infrastructure [see #18]

cmp bives-cellml:wiki

comment:4 Changed 17 months ago by Martin Scharm <martin@…>

In c8ade31a265b6bc7495f6e5c7acf9812f17ed15d:

fixed first test for renaming a species [see #18]

comment:5 Changed 17 months ago by Martin Scharm <martin@…>

In 9fdb68e7b6c30961fa66c8328a21ba264ad4f957:

implemented annotations for changes on species plus corresponding tests tests [see #18]

that involves

  • renaming/re-id-ing of species
  • deletion
  • changing values -> math affecting

comment:6 Changed 17 months ago by Martin Scharm <martin@…>

In 7d399c9a9d1f92b6ea0ce0c7b4348acc0c7d7ff5:

add support for annotations of function changes [see #18]

ins/del as well as changes

comment:7 Changed 17 months ago by Martin Scharm <martin@…>

In ae21d7560cca53399cba45a05e9ec6c9d684b766:

add support for annotating changes in events [see #18]

comment:8 Changed 17 months ago by Martin Scharm <martin@…>

In 668e7a60b15627c14cc2c86c5bc14e354ddae6fc:

add support for annotating changes in rules [see #18]

comment:9 Changed 17 months ago by Martin Scharm <martin@…>

In 2f3f686e18be1f811369e82153a5072308b50633:

add support for annotating changes in spec changes [see #18]

detects changes of SBML level and version

comment:10 Changed 17 months ago by Martin Scharm <martin@…>

In 59ccc07099484c04c33e04e720d8e11d7795e1b4:

add support for annotating changes of model name/id [see #18]

comment:11 Changed 17 months ago by Martin Scharm <martin@…>

In e77894098aebcdf6f5ca712b39c5a4d20998e865:

add support for annotating changes in machine readable annotations [see #18]

comment:12 Changed 17 months ago by Martin Scharm <martin@…>

In e0714348c515ce2d9d2dc516d3d2a721f139baca:

add support for annotating changes in textual descriptions [see #18]

comment:13 Changed 17 months ago by Martin Scharm <martin@…>

In bb42c601b29f0389dd28e1e59351f3afb7c7658b:

add support for annotating changes in reaction networks [see #18]

comment:14 Changed 17 months ago by Martin Scharm <martin@…>

In 0625f0d2353c49d667984faf08525a5eff260937:

add support for annotating changes of (local) parameters [see #18]

comment:15 Changed 17 months ago by Martin Scharm <martin@…>

In de7505a94071e52c2c7cbcdce9decff9f9b1a0b5:

add support for annotating changes in unit definitions [see #18]

comment:16 Changed 17 months ago by Martin Scharm <martin@…>

  • Resolution set to fixed
  • Status changed from new to closed

In e4f248ffc5fc115807f84e313d0b21e28cb11d03:

first release officially supporting COMODI annotations [fixes #18]

comment:17 Changed 13 months ago by Martin Scharm <martin@…>

In b46cfd25c6be2daff57dc5a4a36cbfc81d3bdfd2:

update to latest bives version

this does not include annotations by default [see #18]

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